Provenance: ipa1.ireceptor.org

  • 2020-06-04
  • 2020-01-16
    • For the following studies, the software_versions incorrectly recorded that the repertoire was annotated with igblast v1.8.0 when the annotation was done with IMGT/V-QUEST (either v3.4.17, v3.4.15, v3.4.13, v3.4.11, v3.4.8, v3.4.3). The software_versions for the following studies were updated to fix this problem:
      • Tipton et al., Study ID PRJNA280743
      • Chang et al., Study ID PRJEB9332
      • Palanichamy et al., Study ID PRJNA248411
      • Bashford-Rogers et al., Study ID PRJEB1289
      • Michaeli et al., Study ID PRJNA206548
      • Kwong et al., Study ID PRJNA188191
      • Boyd et al., Study ID SRP001460
      • Valdes-Aleman et al., Study ID PRJNA275625
      • Collins et al., Study ID PRJEB8745
      • DeKosky et al., Study ID PRJNA260556
      • Omri Snir et al., Study ID PRJNA368623
  • 2019-10-16
    • AIRR TSV downloads that occurred before 2019-10-16 would have contained a correct Junction NT Length (AIRR field junction_length) but the junction NT sequence (AIRR field junction) would have been returned as a empty string in the AIRR TSV download file. This problem has been fixed. The problem would have occurred for all studies. Note that the AA junction (AIRR field junction_aa) and AA junction length (AIRR filed junction_aa_length) were returned correctly.
  • 2019-07-29
    • paired_reads_assembly: Changed to follow AIRR Community naming conventions- was previously paired_read_assembly for all studies
  • 2019-06-11
  • 2019-04-22 to 2019-04-30
    • IPA1 down due to hardware problem with our service provider, data was not available during this time period.
  • 2019-02-10:
  • 2019-02-15:
    • pcr_target_locus: Changed to follow new AIRR Community controlled vocabulary- all studies
    • complete_sequences: Changed to display whether full VDJ was captured- all studies
  • 2019-01-31:
  • 2019-01-22:
    • Removed line breaks from all string fields- all studies
  • 2019-01-15:
    • study_id: Removed spaces from the end of study_id- all studies
  • 2019-01-03:
    • ir_min_age: Changed NA to -1- all studies
    • ir_max_age: Changed NA to 999- all studies
  • 2018-12-04:
    • age_event: Capitalized "Sample collection"- all studies
    • strain_name: Capitalized "BALB/c"- all studies
    • disease_diagnosis: Changed to adhere to controlled MiAIRR vocabulary- all studies
    • tissue: Changed to adhere to controlled MiAIRR vocabulary- all studies; Capitalized
    • collection_time_event: Filled out for all possible entries; Capitalized
    • cell_subset: Filled out for all possible entries; Capitalized
    • single_cell: Filled out as a boolean, True or False- all studies
    • pcr_target_locus: Changed to adhere to controlled MiAIRR vocabulary- all studies
    • forward_pcr_primer_target_location: Changed to adhere to controlled MiAIRR vocabulary- all studies
    • reverse_pcr_primer_target_location: Changed to adhere to controlled MiAIRR vocabulary- all studies
    • ir_germline_database: Filled out for all possible entries- all studies
    • single_or_paired: Changed to lowercase- all studies
    • regions_included_in_sequence: Filled out for all possible entries- all studies
  • 2018-12-04: Data provenance tracking initiated on ipa.ireceptor.org.
  • 2018-07-12: The iReceptor Public Archive repository is now online.