Provenance: t1d-1.ireceptor.org

2024-03-12: Updated gene calls for Adaptive's incorrectly named genes (according to AIRR suggested nomenclature)
- Updated Mitchell et al. and Seay et al. with corrected VDJ gene nomenclature calls
- Genes that were changed can be found in the Adaptive-Fix github directory on the iReceptor github - https://github.com/sfu-ireceptor/sandbox/tree/0aaa7828f60e53e6006abfdb0c...
- Summary of changes at the gene level (appropriate allele changes also made - e.g. TRBV1-1*01 to TRBV1*01):
  - TRBV1-1 to TRBV1 - 124871 sequences
  - TRBV2-1 to TRBV2 - 2309941 sequences
  - TRBV9-1 to TRBV9 - 2577037 sequences
  - TRBV13-1 to TRBV13 - 550833 sequences
  - TRBV14-1 to TRBV14 - 829030 sequences
  - TRBV15-1 to TRBV15 - 901472 sequences
  - TRBV16-1 to TRBV16 - 60085 sequences
  - TRBV17-1 to TRBV17 - 1965 sequences
  - TRBV18-1 to TRBV18 - 1712890 sequences
  - TRBV19-1 to TRBV19 - 3569313 sequences
  - TRBV26-1 to TRBV26 - 436 sequences
  - TRBV27-1 to TRBV27 - 3042168 sequences
  - TRBV28-1 to TRBV28 - 3132593 sequences
  - TRBV30-1 to TRBV30 - 1635960 sequences
  - TRBD1-1 to TRBD1 - 42629748 sequences
  - TRBD2-1 to TRBD2 - 42797994 sequences
2024-02-07: Study added
- 32 Million annotated sequences from Gomez-Tourino et al., "T cell receptor β-chains display abnormal shortening and repertoire sharing in type 1 diabetes"
2023-12-07: Study added
- 6 Thousand annotated sequences from Anderson et al., "Human islet T cells are highly reactive to preproinsulin in type 1 diabetes"
2023-04-04: Study added
- 6.9 Million annotated sequences from Seay et al., "Tissue distribution and clonal diversity of the T and B cell repertoire in type 1 diabetes"
2023-01-19: Study added
- 62 Million annotated sequences from Mitchell et al., "Temporal development of T cell receptor repertoires during childhood in health and disease", including subject MHC/HLA typing.
2023-01-19: Repository on line.